Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Sperm
NA
NA

Attributes by original data submitter

Sample

source_name
High fat diet
cell types
spermatozoa
gender
male
strain
C57BL/6J
chip antibody
Input control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extraction and specific precipitation using anti -H3 or anti -H3K4me1 antibodies, Input served as control After application of the Illumina ChIP-seq library preparation kit the sample was subjected to Solexa sequencing (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
20080907
Reads aligned (%)
93.0
Duplicates removed (%)
36.6
Number of peaks
833 (qval < 1E-05)

mm9

Number of total reads
20080907
Reads aligned (%)
92.3
Duplicates removed (%)
36.6
Number of peaks
867 (qval < 1E-05)

Base call quality data from DBCLS SRA