Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Breast cancer cells
cell lines
MCF-7
agent
E2
time
24 hr
chip antibody
ERα, Santa Cruz Biotechnology, sc-8005 X

Sequenced DNA Library

library_name
GSM862181: ERα ChIP-seq 4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
81003638
Reads aligned (%)
67.2
Duplicates removed (%)
20.0
Number of peaks
1416 (qval < 1E-05)

hg38

Number of total reads
81003638
Reads aligned (%)
69.3
Duplicates removed (%)
18.3
Number of peaks
1567 (qval < 1E-05)

Base call quality data from DBCLS SRA