SRX115968
GSM862180: ERα ChIP-seq 3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Breast cancer cells
cell lines
MCF-7
agent
E2
time
4 hr
chip antibody
ERα, Santa Cruz Biotechnology, sc-8005 X

Sequenced DNA Library

library_name
GSM862180: ERα ChIP-seq 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
58660856
Reads aligned (%)
91.3
Duplicates removed (%)
63.9
Number of peaks
1090 (qval < 1E-05)

hg19

Number of total reads
58660856
Reads aligned (%)
90.6
Duplicates removed (%)
65.7
Number of peaks
1159 (qval < 1E-05)

Base call quality data from DBCLS SRA