SRX1158180
GSM1857030: ICN1 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
CUTLL1, ICN1, input
cell line
CUTLL1
cell type
T-cell lymphoma cell line
notch
wild-type
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei, and protein-DNA complexes were isolated with antibody. Libraries were prepared according to New England BioLabs instructions accompanying the DNA Sample Prep Master Mix Set 1 (NEB E6040S).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44194707
Reads aligned (%)
97.5
Duplicates removed (%)
6.5
Number of peaks
1789 (qval < 1E-05)

hg19

Number of total reads
44194707
Reads aligned (%)
96.7
Duplicates removed (%)
7.9
Number of peaks
1556 (qval < 1E-05)

Base call quality data from DBCLS SRA