Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

MDA-MB-231

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MDA-MB-231

genotype/variation

GATA3 expressed

passages

3-7

antibody

N/A

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Libraries were prepared according to Illumina or BIOO SCIENTIFIC instruction. ATAC-seq libraries were prepared by following the original protocol (Buenrostro et al., 2013) with several modifications (as described above)

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

22915945

Reads aligned (%)

98.2

Duplicates removed (%)

11.4

Number of peaks

408 (qval < 1E-05)

hg19

Number of total reads

22915945

Reads aligned (%)

97.2

Duplicates removed (%)

11.7

Number of peaks

293 (qval < 1E-05)