SRX115365
GSM860157: MEF STAT5-KO-GH-IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF_STAT5-KO-GH-IgG
background strain
C57BL/6
genotype/variation
STAT5 KO; Stat5-/-
tissue origin
12.5-13.5-day fetuses
cell type
mouse embryonic fibroblasts (MEFs)
passages
9-10
stimulated with
1 ug/ml growth hormone (GH) for 45 min
chip antibody
IgG control
chip antibody vendor
R&D System

Sequenced DNA Library

library_name
GSM860157: MEF_STAT5-KO-GH-IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31926834
Reads aligned (%)
99.7
Duplicates removed (%)
82.1
Number of peaks
85 (qval < 1E-05)

mm9

Number of total reads
31926834
Reads aligned (%)
99.7
Duplicates removed (%)
82.1
Number of peaks
85 (qval < 1E-05)

Base call quality data from DBCLS SRA