Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
patient-derived colon cancer cell line induced with DACOR1
cancer type
colorectal cancer
Sex
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The supernatant was incubated at 65°C overnight to reverse crosslinking before extracting DNA using DNeasy Blood & Tissue Kit (Qiagen). Illumina ChIP-seq library preparation kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
10561763
Reads aligned (%)
73.9
Duplicates removed (%)
2.8
Number of peaks
3974 (qval < 1E-05)

hg19

Number of total reads
10561763
Reads aligned (%)
73.3
Duplicates removed (%)
2.8
Number of peaks
3760 (qval < 1E-05)

Base call quality data from DBCLS SRA