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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Colon cancer
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1150169
GSM1854426: Control; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA
Attributes by original data submitter
Sample
source_name
patient-derived colon cancer cell line
cancer type
colorectal cancer
Sex
male
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The supernatant was incubated at 65°C overnight to reverse crosslinking before extracting DNA using DNeasy Blood & Tissue Kit (Qiagen). Illumina ChIP-seq library preparation kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
29453544
Reads aligned (%)
82.0
Duplicates removed (%)
4.2
Number of peaks
110479 (qval < 1E-05)
hg19
Number of total reads
29453544
Reads aligned (%)
81.5
Duplicates removed (%)
4.2
Number of peaks
109655 (qval < 1E-05)
Base call quality data from
DBCLS SRA