SRX114991
GSM859511: T-ALL mnase input replicate 2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL mnase input
cell type
Notch1-IC over-expressing tumors (T-ALL)
chip antibody
none (input)

Sequenced DNA Library

library_name
GSM859511: T-ALL mnase input replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21093628
Reads aligned (%)
90.3
Duplicates removed (%)
28.5
Number of peaks
647 (qval < 1E-05)

mm9

Number of total reads
21093628
Reads aligned (%)
89.8
Duplicates removed (%)
28.4
Number of peaks
593 (qval < 1E-05)

Base call quality data from DBCLS SRA