SRX114681
GSM857388: P19 control; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
P19
Tissue
Embryo
Disease
Teratocarcinoma; Embryonal Carcinoma

Attributes by original data submitter

Sample

source_name
P19_preimmune serum_ChIP-seq
cell type
P19 cells
genotype/variation
untransduced control
chip antibody
preimmune serum

Sequenced DNA Library

library_name
GSM857388: P19 control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12061477
Reads aligned (%)
93.0
Duplicates removed (%)
7.6
Number of peaks
641 (qval < 1E-05)

mm9

Number of total reads
12061477
Reads aligned (%)
92.8
Duplicates removed (%)
7.8
Number of peaks
674 (qval < 1E-05)

Base call quality data from DBCLS SRA