Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARNTL

Cell type

Cell type Class
Kidney
Cell type
786-O
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
786-O clear cell renal carcinoma cells
cell line
786-O clear cell renal carcinoma cells
chip antibody
HIF-1beta (Novus Biologicals, NB100-110)

Sequenced DNA Library

library_name
GSM856791: HIF-1beta
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
19780804
Reads aligned (%)
18.2
Duplicates removed (%)
59.6
Number of peaks
1864 (qval < 1E-05)

hg38

Number of total reads
19780804
Reads aligned (%)
18.6
Duplicates removed (%)
58.9
Number of peaks
1837 (qval < 1E-05)

Base call quality data from DBCLS SRA