SRX114494
GSM856791: HIF-1beta; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARNT

Cell type

Cell type Class
Kidney
Cell type
786-O
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
786-O clear cell renal carcinoma cells
cell line
786-O clear cell renal carcinoma cells
chip antibody
HIF-1beta (Novus Biologicals, NB100-110)

Sequenced DNA Library

library_name
GSM856791: HIF-1beta
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19780804
Reads aligned (%)
45.3
Duplicates removed (%)
58.9
Number of peaks
1837 (qval < 1E-05)

hg19

Number of total reads
19780804
Reads aligned (%)
45.1
Duplicates removed (%)
59.6
Number of peaks
1864 (qval < 1E-05)

Base call quality data from DBCLS SRA