SRX114493
GSM856790: HIF-2alpha; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EPAS1

Cell type

Cell type Class
Kidney
Cell type
786-O
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
786-O clear cell renal carcinoma cells
cell line
786-O clear cell renal carcinoma cells
chip antibody
HIF-2alpha (PM9)

Sequenced DNA Library

library_name
GSM856790: HIF-2alpha
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26011906
Reads aligned (%)
24.7
Duplicates removed (%)
52.4
Number of peaks
874 (qval < 1E-05)

hg19

Number of total reads
26011906
Reads aligned (%)
24.6
Duplicates removed (%)
53.2
Number of peaks
895 (qval < 1E-05)

Base call quality data from DBCLS SRA