SRX114492
GSM856789: Pre-immune control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
786-O
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
786-O clear cell renal carcinoma cells
cell line
786-O clear cell renal carcinoma cells
chip antibody
control

Sequenced DNA Library

library_name
GSM856789: Pre-immune control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24960156
Reads aligned (%)
26.7
Duplicates removed (%)
64.7
Number of peaks
76 (qval < 1E-05)

hg19

Number of total reads
24960156
Reads aligned (%)
26.5
Duplicates removed (%)
65.8
Number of peaks
117 (qval < 1E-05)

Base call quality data from DBCLS SRA