SRX1143599
GSM1849551: H2009 K27ac e3KRAB2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma cell lines
NA
NA

Attributes by original data submitter

Sample

source_name
Cancer cell line
tumor type
Lung adenocarcinomas
antibody
H3K27ac ab4729

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
3019181
Reads aligned (%)
99.5
Duplicates removed (%)
0.9
Number of peaks
28 (qval < 1E-05)

hg19

Number of total reads
3019181
Reads aligned (%)
99.2
Duplicates removed (%)
1.2
Number of peaks
38 (qval < 1E-05)

Base call quality data from DBCLS SRA