Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUN

Cell type

Cell type Class
Breast
Cell type
BT-549
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
BT549_TNFalpha_c-Jun antibody
cell line
BT549
cell type
Triple negative breast cancer cells
treated with
TNFα for 6 h
chip antibody
c-Jun (H-79, Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
48368562
Reads aligned (%)
49.4
Duplicates removed (%)
49.5
Number of peaks
3179 (qval < 1E-05)

hg38

Number of total reads
48368562
Reads aligned (%)
51.6
Duplicates removed (%)
47.7
Number of peaks
2686 (qval < 1E-05)

Base call quality data from DBCLS SRA