Antigen

Antigen Class

TFs and others

Antigen

JUN

Cell type

Cell type Class

Breast

Cell type

BT-549

Primary Tissue

Breast

Tissue Diagnosis

Adenocarcinoma Ductal

Sample

source_name

BT549_TNFalpha_c-Jun antibody

cell line

BT549

cell type

Triple negative breast cancer cells

treated with

TNFα for 6 h

chip antibody

c-Jun (H-79, Santa Cruz)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Standard Illumina DNA library construction ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

48368562

Reads aligned (%)

98.6

Duplicates removed (%)

47.7

Number of peaks

2686 (qval < 1E-05)

hg19

Number of total reads

48368562

Reads aligned (%)

97.8

Duplicates removed (%)

49.5

Number of peaks

3179 (qval < 1E-05)