SRX1142762
GSM1848884: Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
BT-549
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
DNA from BT549_TNFalpha
cell line
BT549
cell type
Triple negative breast cancer cells
treated with
TNFα for 6 h
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45834632
Reads aligned (%)
99.1
Duplicates removed (%)
46.5
Number of peaks
890 (qval < 1E-05)

hg19

Number of total reads
45834632
Reads aligned (%)
98.4
Duplicates removed (%)
48.2
Number of peaks
1034 (qval < 1E-05)

Base call quality data from DBCLS SRA