Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Genomic DNA, CD4 cells, H3K4me3 ChIP, Graves' patient
tissue
blood
diagnosis
Graves' patient
cell type
CD4 T cells
gender
female
age
26
antibody
H3K4me3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
35052563
Reads aligned (%)
95.4
Duplicates removed (%)
52.6
Number of peaks
20972 (qval < 1E-05)

hg19

Number of total reads
35052563
Reads aligned (%)
94.9
Duplicates removed (%)
53.0
Number of peaks
20881 (qval < 1E-05)

Base call quality data from DBCLS SRA