Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
wildtype TT2 ESC
strain background
C57BL6 x CBA
genotype/variation
wildtype TT2
cell type
ES cell
passage
passage 5 to 10

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Native ChIP pulldown DNA fragments Illumina ChIP TRUESeq kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
37287049
Reads aligned (%)
97.9
Duplicates removed (%)
12.3
Number of peaks
383 (qval < 1E-05)

mm9

Number of total reads
37287049
Reads aligned (%)
97.6
Duplicates removed (%)
12.3
Number of peaks
385 (qval < 1E-05)

Base call quality data from DBCLS SRA