Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SP1

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
SP1 ChIP-seq - HCT116
cell line
HCT116
antibody
SP1
antibody vendor
Active Motif
antibody catalog number
#39058
antibody lot number
19108005

Sequenced DNA Library

library_name
GSM855449: SP1 ChIP-seq - HCT116
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
32066209
Reads aligned (%)
51.1
Duplicates removed (%)
7.2
Number of peaks
39290 (qval < 1E-05)

hg38

Number of total reads
32066209
Reads aligned (%)
51.9
Duplicates removed (%)
6.3
Number of peaks
39408 (qval < 1E-05)

Base call quality data from DBCLS SRA