SRX113621
GSM855099: H3K9me3 nucleosome-IP from wild type C. elegans from a time-course RNAi experiment, 4 hours; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Larvae
Cell type
L4
NA
NA

Attributes by original data submitter

Sample

source_name
larval L4 stage C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
wild type
developmental stage
larval L4 stage C. elegans
RNAi target
chrI:6,907,993-6,909,159 (smg-1)

Sequenced DNA Library

library_name
GSM855099: H3K9me3 nucleosome-IP from wild type C. elegans from a time-course RNAi experiment, 4 hours
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
7751200
Reads aligned (%)
95.7
Duplicates removed (%)
45.3
Number of peaks
1449 (qval < 1E-05)

ce10

Number of total reads
7751200
Reads aligned (%)
95.7
Duplicates removed (%)
45.3
Number of peaks
1437 (qval < 1E-05)

Base call quality data from DBCLS SRA