SRX113611
GSM855089: H3K9me3 nucleosome-IP from MAGO C. elegans that underwent smg-1 (center region) RNAi; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

source_name
adult C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
MAGO (ppw-1(tm914), sago-1(tm1195), sago-2(tm894), F58G1.1(tm1019), C06A1.4(tm887), and M03D4.6(tm1144)
developmental stage
adult
RNAi target
chrI:6,907,993-6,909,159 (smg-1)

Sequenced DNA Library

library_name
GSM855089: H3K9me3 nucleosome-IP from MAGO C. elegans that underwent smg-1 (center region) RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
15876751
Reads aligned (%)
94.3
Duplicates removed (%)
51.9
Number of peaks
3274 (qval < 1E-05)

ce10

Number of total reads
15876751
Reads aligned (%)
94.3
Duplicates removed (%)
51.9
Number of peaks
3185 (qval < 1E-05)

Base call quality data from DBCLS SRA