Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

source_name
adult C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
rde-1(ne300)
developmental stage
adult
RNAi target
chrI:6,907,993-6,909,159 (smg-1)

Sequenced DNA Library

library_name
GSM855088: H3K9me3 nucleosome-IP from rde-1(ne300) mutant C. elegans that underwent smg-1 (center region) RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

ce11

Number of total reads
14341616
Reads aligned (%)
93.7
Duplicates removed (%)
60.7
Number of peaks
3436 (qval < 1E-05)

ce10

Number of total reads
14341616
Reads aligned (%)
93.6
Duplicates removed (%)
60.7
Number of peaks
3412 (qval < 1E-05)

Base call quality data from DBCLS SRA