Curated Sample Data


Genome
ce10
Antigen Class
Histone
Antigen
H3K9me3
Cell type Class
Adult
Cell type
Adult

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
adult C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
wild type
developmental stage
adult
RNAi target
chrI:6,913,664-6,913,933 (smg-1)

Metadata from Sequence Read Archive

Library Description


library_name
GSM855084: H3K9me3 nucleosome-IP from wild type C. elegans that underwent smg-1 (5' end) RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
9740995
Reads aligned (%)
94.5
Duplicates removed (%)
39.9
Number of peaks
3169 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA