SRX113603
GSM855081: H3K9me3 nucleosome-IP from eri-1(mg366) mutant C. elegans that underwent lir-1 RNAi; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic C. elegans
chip antibody
anti-H3K9me3 antibody
chip antibody manufacturer
Abcam
genetic background
N2
strain
eri-1(mg366)
developmental stage
embryo
RNAi target
chrII:7680827-7682011 (lir-1)

Sequenced DNA Library

library_name
GSM855081: H3K9me3 nucleosome-IP from eri-1(mg366) mutant C. elegans that underwent lir-1 RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
23808649
Reads aligned (%)
97.3
Duplicates removed (%)
42.8
Number of peaks
0 (qval < 1E-05)

ce10

Number of total reads
23808649
Reads aligned (%)
97.3
Duplicates removed (%)
42.8
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA