Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BMI1

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex, PCGF4 ChIP
cell line
293T-Rex
transgene
Flag-HA (empty vector)
chip antibody
PCGF4
chip antibody vendor
Bethyl
chip antibody lot
A301-694A-2

Sequenced DNA Library

library_name
GSM855019: PCGF4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
17422413
Reads aligned (%)
90.7
Duplicates removed (%)
7.3
Number of peaks
762 (qval < 1E-05)

hg38

Number of total reads
17422413
Reads aligned (%)
92.4
Duplicates removed (%)
6.1
Number of peaks
499 (qval < 1E-05)

Base call quality data from DBCLS SRA