SRX113587
GSM855015: H3K27me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex, H3K27me3 ChIP
cell line
293T-Rex
transgene
Flag-HA (empty vector)
chip antibody
H3K27me3
chip antibody vendor
Millipore
chip antibody lot
DAM1764447

Sequenced DNA Library

library_name
GSM855015: H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32972154
Reads aligned (%)
99.5
Duplicates removed (%)
4.7
Number of peaks
197 (qval < 1E-05)

hg19

Number of total reads
32972154
Reads aligned (%)
99.3
Duplicates removed (%)
4.9
Number of peaks
220 (qval < 1E-05)

Base call quality data from DBCLS SRA