SRX113581
GSM855009: FH-PCGF1.HA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PCGF1

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex, FH-PCGF1.HA ChIP
cell line
293T-Rex
transgene
Flag-HA-PCGF1
chip antibody
HA
chip antibody vendor
Abcam
chip antibody lot
GR20600-2

Sequenced DNA Library

library_name
GSM855009: FH-PCGF1.HA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22626195
Reads aligned (%)
98.3
Duplicates removed (%)
14.7
Number of peaks
399 (qval < 1E-05)

hg19

Number of total reads
22626195
Reads aligned (%)
97.6
Duplicates removed (%)
15.7
Number of peaks
657 (qval < 1E-05)

Base call quality data from DBCLS SRA