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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Preimplantation embryo
ATCC
MeSH
RIKEN BRC
SRX1134801
GSM1845264: ChIP-Seq PN5 zygote K4Me3 rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Embryo
Cell type
Preimplantation embryo
NA
NA
Attributes by original data submitter
Sample
source_name
Preimplantation embryo
strain
C57BL/6N x PWK
developmental stage
Preimplantation embryo
chip antibody
custom-made H3K4Me3 antibody (Abmart)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After removing the zona pellucida, embryonic cells were washed with PBS and incubated in lysis buffer. ChIP-Seq libraries were prepared using TELP developed by PengXu et al. with slightly modification
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
47107705
Reads aligned (%)
60.8
Duplicates removed (%)
6.0
Number of peaks
146 (qval < 1E-05)
mm9
Number of total reads
47107705
Reads aligned (%)
60.7
Duplicates removed (%)
6.0
Number of peaks
126 (qval < 1E-05)
Base call quality data from
DBCLS SRA