Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Grip1

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

source_name
primary bone marrow-derived macrophages
cell type
primary bone marrow-derived macrophages
strain
C57BL/6
chip antibody
GRIP1
treatment
Dexamethasone treated, LPS-stimulated macrophages

Sequenced DNA Library

library_name
GSM851496: GRIP1-ChIP + 1uM Dex + LPS replicate
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
39043026
Reads aligned (%)
95.3
Duplicates removed (%)
62.9
Number of peaks
4704 (qval < 1E-05)

mm9

Number of total reads
39043026
Reads aligned (%)
95.2
Duplicates removed (%)
63.0
Number of peaks
4740 (qval < 1E-05)

Base call quality data from DBCLS SRA