Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Control mouse intestinal stem cells
strain background
B6;129 mixed
genotype/variation
Wild-Type
cell type
Adult Epitheial cells; proximal 1/3 of intestine

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Epithelium from proximal 1/3 of mouse intestine was isolated by incubation with 5mM EDTA in PBS for 45 minutes at 4°C. Cells were snap-frozen in liquid nitrogen and pooled for subsequent ChIP analysis. Whole cell lysates were sonicated, but not immunoprecipitated. The ChIPseq DNA Sample Prep Kit (Illumina) was used to prepare libraries, and 50 bp single-end reads were sequenced on an Illumina Hi-Seq 2000 instrument.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
54614373
Reads aligned (%)
94.5
Duplicates removed (%)
13.0
Number of peaks
410 (qval < 1E-05)

mm9

Number of total reads
54614373
Reads aligned (%)
94.3
Duplicates removed (%)
13.0
Number of peaks
460 (qval < 1E-05)

Base call quality data from DBCLS SRA