SRX113181
GSM854153: TEX TCP ATRA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
TEX
NA
NA

Attributes by original data submitter

Sample

source_name
TEX cells
cell line
TEX
treatment
all-trans-retinoic acid and tranylcypromine
antibody
anti-H3K4me2

Sequenced DNA Library

library_name
GSM854153: TEX_TCP_ATRA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50975101
Reads aligned (%)
89.1
Duplicates removed (%)
39.2
Number of peaks
16465 (qval < 1E-05)

hg19

Number of total reads
50975101
Reads aligned (%)
88.2
Duplicates removed (%)
40.6
Number of peaks
16022 (qval < 1E-05)

Base call quality data from DBCLS SRA