Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
TEX
NA
NA

Attributes by original data submitter

Sample

source_name
TEX cells
cell line
TEX
treatment
all-trans-retinoic acid
antibody
anti-H3K4me2

Sequenced DNA Library

library_name
GSM854151: TEX_ATRA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
51087922
Reads aligned (%)
85.4
Duplicates removed (%)
68.0
Number of peaks
15965 (qval < 1E-05)

hg19

Number of total reads
51087922
Reads aligned (%)
84.7
Duplicates removed (%)
69.1
Number of peaks
15895 (qval < 1E-05)

Base call quality data from DBCLS SRA