SRX113178
GSM854150: TEX untreated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
TEX
NA
NA

Attributes by original data submitter

Sample

source_name
TEX cells
cell line
TEX
treatment
vehicle
antibody
anti-H3K4me2

Sequenced DNA Library

library_name
GSM854150: TEX_untreated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50419173
Reads aligned (%)
82.8
Duplicates removed (%)
23.8
Number of peaks
5421 (qval < 1E-05)

hg19

Number of total reads
50419173
Reads aligned (%)
81.8
Duplicates removed (%)
25.3
Number of peaks
4903 (qval < 1E-05)

Base call quality data from DBCLS SRA