SRX113176
GSM854148: HL60 TCP ATRA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cells
cell line
HL-60
treatment
all-trans-retinoic acid and tranylcypromine
antibody
anti-H3K4me2

Sequenced DNA Library

library_name
GSM854148: HL60_TCP_ATRA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48944814
Reads aligned (%)
88.6
Duplicates removed (%)
14.9
Number of peaks
77898 (qval < 1E-05)

hg19

Number of total reads
48944814
Reads aligned (%)
88.2
Duplicates removed (%)
15.5
Number of peaks
77732 (qval < 1E-05)

Base call quality data from DBCLS SRA