Curated Sample Data


Genome
hg19
Antigen Class
Histone
Antigen
H3K4me2
Cell type Class
Blood
Cell type
HL-60

Cell type information


Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by Original Data Submitter


source_name
HL-60 cells
cell line
HL-60
treatment
all-trans-retinoic acid and tranylcypromine
antibody
anti-H3K4me2

Metadata from Sequence Read Archive

Library Description


library_name
GSM854148: HL60_TCP_ATRA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
48944814
Reads aligned (%)
88.2
Duplicates removed (%)
15.5
Number of peaks
77732 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA