SRX113173
GSM854145: HL60 untreated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cells
cell line
HL-60
treatment
vehicle
antibody
anti-H3K4me2

Sequenced DNA Library

library_name
GSM854145: HL60_untreated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43966824
Reads aligned (%)
81.1
Duplicates removed (%)
12.4
Number of peaks
58215 (qval < 1E-05)

hg19

Number of total reads
43966824
Reads aligned (%)
80.7
Duplicates removed (%)
12.9
Number of peaks
59102 (qval < 1E-05)

Base call quality data from DBCLS SRA