SRX113172
GSM854144: HL60 IgG; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cells
cell line
HL-60
treatment
vehicle
antibody
Immunoglobulin G

Sequenced DNA Library

library_name
GSM854144: HL60_IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46700086
Reads aligned (%)
63.5
Duplicates removed (%)
27.4
Number of peaks
1072 (qval < 1E-05)

hg19

Number of total reads
46700086
Reads aligned (%)
62.9
Duplicates removed (%)
28.7
Number of peaks
1089 (qval < 1E-05)

Base call quality data from DBCLS SRA