Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
Mouse testis
strain
C57BL/6
antibody
None

Sequenced DNA Library

library_name
GSM851327: RenLab-Input-testis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
14188794
Reads aligned (%)
92.0
Duplicates removed (%)
17.2
Number of peaks
579 (qval < 1E-05)

mm9

Number of total reads
14188794
Reads aligned (%)
91.8
Duplicates removed (%)
17.4
Number of peaks
647 (qval < 1E-05)

Base call quality data from DBCLS SRA