Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
Placenta
MeSH Description
A highly vascularized mammalian fetal-maternal organ and major site of transport of oxygen, nutrients, and fetal waste products. It includes a fetal portion (CHORIONIC VILLI) derived from TROPHOBLASTS and a maternal portion (DECIDUA) derived from the uterine ENDOMETRIUM. The placenta produces an array of steroid, protein and peptide hormones (PLACENTAL HORMONES).

Attributes by original data submitter

Sample

source_name
Mouse placenta
strain
C57BL/6
antibody
None

Sequenced DNA Library

library_name
GSM851321: RenLab-Input-placenta
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
31306487
Reads aligned (%)
85.0
Duplicates removed (%)
28.8
Number of peaks
815 (qval < 1E-05)

mm9

Number of total reads
31306487
Reads aligned (%)
84.8
Duplicates removed (%)
28.9
Number of peaks
896 (qval < 1E-05)

Base call quality data from DBCLS SRA