Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestines
MeSH Description
The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Attributes by original data submitter

Sample

source_name
Mouse intestine
strain
C57BL/6
antibody
None

Sequenced DNA Library

library_name
GSM851309: RenLab-Input-intestine
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
57657120
Reads aligned (%)
91.1
Duplicates removed (%)
11.7
Number of peaks
911 (qval < 1E-05)

mm9

Number of total reads
57657120
Reads aligned (%)
90.9
Duplicates removed (%)
11.7
Number of peaks
1033 (qval < 1E-05)

Base call quality data from DBCLS SRA