SRX112942
GSM851292: RenLab-CTCF-embryonic-limb

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse E14.5 limb
strain
C57BL/6
antibody
Kim et al., 2007

Sequenced DNA Library

library_name
GSM851292: RenLab-CTCF-embryonic-limb
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42460476
Reads aligned (%)
51.8
Duplicates removed (%)
41.7
Number of peaks
28318 (qval < 1E-05)

mm9

Number of total reads
42460476
Reads aligned (%)
51.7
Duplicates removed (%)
41.9
Number of peaks
28331 (qval < 1E-05)

Base call quality data from DBCLS SRA