Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Peripheral blood
diagnosis
Healthy control
tissue
Peripheral blood
cell type
CD4+CD45RO+ T cells
chip antibody
anti H3K27ac (ab4729; Abcam)
in vitro activation
yes

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
23331566
Reads aligned (%)
94.6
Duplicates removed (%)
12.5
Number of peaks
27865 (qval < 1E-05)

hg19

Number of total reads
23331566
Reads aligned (%)
94.4
Duplicates removed (%)
12.5
Number of peaks
27918 (qval < 1E-05)

Base call quality data from DBCLS SRA