SRX112547
GSM850826: PatientB ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1T1

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
Blast cells from human patient B with t(8;21) AML
cell type
t(8;21) AML patient Blast cells
antibody
ETO (E/S19)

Sequenced DNA Library

library_name
GSM850826: PatientB_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18776605
Reads aligned (%)
98.3
Duplicates removed (%)
80.6
Number of peaks
680 (qval < 1E-05)

hg19

Number of total reads
18776605
Reads aligned (%)
97.8
Duplicates removed (%)
81.2
Number of peaks
658 (qval < 1E-05)

Base call quality data from DBCLS SRA