Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1 transfection with RUNX1/ETO siRNA
cell type
Kasumi-1
target
RUNX1
antibody
ETO(C20)sc ( lot number F1809)

Sequenced DNA Library

library_name
GSM850824: RUNX1_siRE_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
36640739
Reads aligned (%)
55.7
Duplicates removed (%)
38.8
Number of peaks
10263 (qval < 1E-05)

hg38

Number of total reads
36640739
Reads aligned (%)
57.5
Duplicates removed (%)
37.3
Number of peaks
10174 (qval < 1E-05)

Base call quality data from DBCLS SRA