Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
adult testis
age
adult
gender
male
genetic background
9R female x 13R male F1
chip antibody
IgG

Sequenced DNA Library

library_name
GSM851671: IgG control KE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
96946603
Reads aligned (%)
76.1
Duplicates removed (%)
34.4
Number of peaks
217 (qval < 1E-05)

mm9

Number of total reads
96946603
Reads aligned (%)
76.0
Duplicates removed (%)
34.5
Number of peaks
241 (qval < 1E-05)

Base call quality data from DBCLS SRA