Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCC1

Cell type

Cell type Class
Kidney
Cell type
G-401
Primary Tissue
Kidney
Tissue Diagnosis
Wilms' tumor

Attributes by original data submitter

Sample

source_name
ChIP-seq_G401_Dox
cell line
G401
cell type
kidney rhabdoid tumor derived cell line
treatment/condition
Doxycycline induced SMARCB1 reexpresion
chip antibody
SMARCC1/BAF155 (Santa Cruz, R-8, sc-9746)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
28532699
Reads aligned (%)
29.6
Duplicates removed (%)
2.8
Number of peaks
974 (qval < 1E-05)

hg38

Number of total reads
28532699
Reads aligned (%)
30.0
Duplicates removed (%)
2.2
Number of peaks
935 (qval < 1E-05)

Base call quality data from DBCLS SRA