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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1123830
GSM1835858: ChIP-seq RT307 H3K4me1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
source_name
RT307
tissue id
RT307
tissue source/type
primary brain rhabdoid tumor tissue
chip antibody
H3K4me1 (Abcam, ab8895)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysis (SDS) of sonicated (Branson) nuclei, ChIP with antibodies and Dynabeads single read Illumina
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
47365886
Reads aligned (%)
96.2
Duplicates removed (%)
22.3
Number of peaks
12509 (qval < 1E-05)
hg19
Number of total reads
47365886
Reads aligned (%)
95.9
Duplicates removed (%)
22.6
Number of peaks
12444 (qval < 1E-05)
Base call quality data from
DBCLS SRA