Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
RT307
tissue id
RT307
tissue source/type
primary brain rhabdoid tumor tissue
chip antibody
H3K4me1 (Abcam, ab8895)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysis (SDS) of sonicated (Branson) nuclei, ChIP with antibodies and Dynabeads single read Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
47365886
Reads aligned (%)
96.2
Duplicates removed (%)
22.3
Number of peaks
12509 (qval < 1E-05)

hg19

Number of total reads
47365886
Reads aligned (%)
95.9
Duplicates removed (%)
22.6
Number of peaks
12444 (qval < 1E-05)

Base call quality data from DBCLS SRA