SRX1123809
GSM1835837: ChIP-seq RT172 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
RT172
tissue id
RT172
tissue source/type
primary brain rhabdoid tumor tissue
chip antibody
H3K4me3 (Millipore, 07-473)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysis (SDS) of sonicated (Branson) nuclei, ChIP with antibodies and Dynabeads single read Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33085503
Reads aligned (%)
97.2
Duplicates removed (%)
38.8
Number of peaks
25197 (qval < 1E-05)

hg19

Number of total reads
33085503
Reads aligned (%)
96.9
Duplicates removed (%)
39.2
Number of peaks
25330 (qval < 1E-05)

Base call quality data from DBCLS SRA