SRX1123808
GSM1835836: ChIP-seq RT172 H3K4me1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
RT172
tissue id
RT172
tissue source/type
primary brain rhabdoid tumor tissue
chip antibody
H3K4me1 (Abcam, ab8895)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysis (SDS) of sonicated (Branson) nuclei, ChIP with antibodies and Dynabeads single read Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23714283
Reads aligned (%)
97.4
Duplicates removed (%)
72.8
Number of peaks
87 (qval < 1E-05)

hg19

Number of total reads
23714283
Reads aligned (%)
97.0
Duplicates removed (%)
73.5
Number of peaks
102 (qval < 1E-05)

Base call quality data from DBCLS SRA