Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC_p65_10 ng/ml_TNF_30min
cell type
Human umbilical vein endothelial cells
passage
within 6 passage
chip antibody
p65
chip antibody vendor
abcam

Sequenced DNA Library

library_name
GSM850307: HUVEC_p65_TNF30min_ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
10677062
Reads aligned (%)
86.8
Duplicates removed (%)
4.7
Number of peaks
7818 (qval < 1E-05)

hg38

Number of total reads
10677062
Reads aligned (%)
87.7
Duplicates removed (%)
4.2
Number of peaks
7880 (qval < 1E-05)

Base call quality data from DBCLS SRA