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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RELA
wikigenes
PDBj
CellType: HUVEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX112016
GSM850307: HUVEC p65 TNF30min ChIP seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RELA
Cell type
Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
HUVEC_p65_10 ng/ml_TNF_30min
cell type
Human umbilical vein endothelial cells
passage
within 6 passage
chip antibody
p65
chip antibody vendor
abcam
Sequenced DNA Library
library_name
GSM850307: HUVEC_p65_TNF30min_ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
10677062
Reads aligned (%)
86.8
Duplicates removed (%)
4.7
Number of peaks
7818 (qval < 1E-05)
hg38
Number of total reads
10677062
Reads aligned (%)
87.7
Duplicates removed (%)
4.2
Number of peaks
7880 (qval < 1E-05)
Base call quality data from
DBCLS SRA