SRX112015
GSM850306: HUVEC p65 TNF00min ChIP seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC_p65_without_TNF
cell type
Human umbilical vein endothelial cells
passage
within 6 passage
chip antibody
p65
chip antibody vendor
abcam

Sequenced DNA Library

library_name
GSM850306: HUVEC_p65_TNF00min_ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12487250
Reads aligned (%)
75.0
Duplicates removed (%)
3.1
Number of peaks
619 (qval < 1E-05)

hg19

Number of total reads
12487250
Reads aligned (%)
74.3
Duplicates removed (%)
4.1
Number of peaks
848 (qval < 1E-05)

Base call quality data from DBCLS SRA